Dissertation

Kolodzik, A. In silico modeling of small molecules and design of eIF-5A activation inhibitors. , Universit├Ąt Hamburg, 2014
http://ediss.sub.uni-hamburg.de/volltexte/2014/7079/pdf/Dissertation.pdf

Journal Articles

2015

Schroeder, M.; Kolodzik, A.; Windshuegel, B.; Krepstakies, M.; Priyadarshini, P.; Hartjen, P.; van Lunzen, J.; Rarey, M.; Hauber, J.; Meier, C. Linker-Region Modified Derivatives of the Deoxyhypusine Synthase Inhibitor CNI-1493 Suppress HIV-1 Replication. Arch. Pharm. Chem. Life Sci. 2015, 348, 1-13

http://dx.doi.org/10.1002/ardp.201500323

2014

Schroeder, M.*; Kolodzik, A.*; Pfaff, K.; Priyadarshini, P.; Krepstakies, M.; Hauber, J.; Rarey, M.; Meier, C. In silico Design, Synthesis, and Screening of Novel Deoxyhypusine Synthase Inhibitors Targeting HIV-1 Replication. ChemMedChem 2014, 9, 940-952
* equal contribution
http://dx.doi.org/10.1002/cmdc.201300481

Urbaczek, S.*; Kolodzik, A.*; Rarey, M. The Valence State Combination Model: A Generic Framework for Handling Tautomers and Protonation States. J. Chem. Inf. Model. 2014, 54, 756-766
* equal contribution
http://pubs.acs.org/doi/abs/10.1021/ci400724v

2013

Urbaczek, S.; Kolodzik, A.; Groth, I.; Heuser, S.; Rarey, M. Reading PDB: Perception of Molecules from 3D Atomic Coordinates. J. Chem. Inf. Model. 2013, 53, 76-87
http://pubs.acs.org/doi/abs/10.1021/ci300358c

2012

Ziegler, P.; Chahoud, T.; Wilhelm, T.; Paellman, N.; Braig, M.; Wiehle, V.; Ziegler, S.; Schroeder, M.; Meier, C.; Kolodzik, A.; Rarey M.; Panse J.; Hauber, J.; Balabanov, S.; Bruemmendorf T. H. Evaluation of deoxyhypusine synthase inhibitors targeting BCR-ABL positive leukemias. Invest. New Drug 2012, 30, 2274-2283
http://dx.doi.org/10.1007/s10637-012-9810-1

Kolodzik, A.; Urbaczek, S.; Rarey, M. Unique Ring Families: A Chemically Meaningful Description of Molecular Ring Topologies. J. Chem. Inf. Model. 2012, 52, 2013-2021
http://pubs.acs.org/doi/abs/10.1021/ci200629w

2011

Urbaczek, S.; Kolodzik, A.; Fischer, R.; Lippert, T.; Heuser, S.; Groth, I.; Schulz-Gasch, T.; Rarey, M. NAOMI - On the almost trivial task of reading molecules from different file formats. J. Chem. Inf. Model. 2011, 51, 3199-3207
http://pubs.acs.org/doi/abs/10.1021/ci200324e

2010

Teriete, P.; Yao Y.; Kolodzik, A.; Yu J.; Song H.; Niederweis M.; Marassi F. M. Mycobacterium tuberculosis Rv0899 adopts a mixed alpha/beta-structure and does not form a transmembrane beta-barrel. 2010, 49(13), 2768-2777
http://www.ncbi.nlm.nih.gov/pubmed/20199110

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